Biological AI Lab
People Publications Talks & Slides Teaching Pictures Opportunities
  • July 2024, IVPP (Chinese Academy of Sciences), Beijing, China. Seminar talk Algorithms for reconstructing within-patient tumor histories to support precision oncology

  • March 2024, German Cancer Research Center (DKFZ), Heidelberg, Germany. Seminar talk Algorithms for reconstructing within-patient tumor histories to support precision oncology

  • August 2023, QMB, Queenstown. Invited talk Model- and data-driven approaches for genotype-phenotype data

  • February 2023, The Interface of Mathematics and Biology, Napier. Talk Online algorithms and cancer evolution.

  • November 2020, Genetics Otago Symposium, University of Otago, Dunedin. Invited talk Cancer phylogenetics using single-cell RNA-seq data

  • July 2020, Broad AI lab, University of Auckland. Seminar talk Somatic Phylogenomics

  • April 2020, Department of Computer Science, University of Otago. Seminar talk The complexity of computing nearest neighbour interchange distances between ranked phylogenetic trees

  • March 2020 Networks and Molecular Biology Research School, Centre International de Rencontres Mathématiques. Poster Detecting Associated Changes in Functional Modules

  • February 2020, 24th Annual New Zealand Phylogenomics Meeting, Waiheke Island. Regular talk Is it hard to update trees when data change?

  • February 2020, 24th Annual New Zealand Phylogenomics Meeting, Waiheke Island. Regular talk Online Phylogenetic Inference

  • October 2019, Postgraduate Symposium, Department of Computer Science, University of Otago. Regular talk Online Algorithms in Computational Biology

  • September 2019, Queenstown Research Week 2019, Queenstown. Regular talk Inferring within patient cancer cell population history from single-cell sequencing data

  • September 2019, Queenstown Research Week 2019, Queenstown. Poster presentation Investigation of gene-gene interactions in the context of antibiotic resistance

  • September 2019, Queenstown Research Week 2019, Queenstown. Poster presentation Pairwise gene-gene interactions from RNAi perturbation screens: scalability and accuracy of recent machine learning tools

  • July 2019, Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany. Workshop talk The Ranked Nearest Neighbour Interchange space of phylogenetic trees

  • February 2019, Deco 2019, The 23rd Annual New Zealand Phylogenomics Meeting, Napier. Regular talk The Ranked Nearest Neighbour Interchange space of phylogenetic trees

  • October 2018, Department of Mathematics and Statistics, University of Otago. Seminar talk The geometry and combinatorics of phylogenetic tree spaces

  • April 2018, Department of Biochemistry, University of Otago. Seminar talk Fitness landscapes, genetic interactions, and inexact data

  • February 2018, Portobello 2018, the Interface of Mathematics and Biology, 22nd Annual New Zealand Phylogenomics Meeting. Regular talk Fitness landscapes and incomplete data

  • August 2017, SIAM Conference on Applied Algebraic Geometry, Polyhedral and Combinatorial Biology Symposium, Georgia Tech, Atlanta. Minisymposium talk Polyhedral Complexes in Phylogenetics and Gene Interaction Studies

  • June 2017, Porquerolles Island, France. Regular talk Genetic interactions from competition experiments

  • May 2017, Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany. Workshop talk Genetic interactions and fitness landscapes

  • March 2017, Computational Biology Group Seminar, ETH Zürich, Basel, Switzerland. Seminar talk Bayesian phylogenetics

  • December 2016, ZiF, Bielefeld, Germany. Workshop talk Gene interactions: a geometric approach

  • November 2016, Computational Evolutionary Biology Seminar, ETH Zürich, Basel, Switzerland. Seminar talk Discrete time trees: theory and open problems

  • October 2016, Computational Biology Seminar, ETH Zürich, Basel, Switzerland. Seminar talk Gene interactions: a geometric approach

  • October 2016, Iowa State University, Ames IO, United States. Seminar talk Gene interactions: a geometric approach

  • September 2016, Denver CO, United States. Regular talk The space of sampled ancestor trees

  • September 2016, Swiss Institute of Bioinformatics, Zürich, Switzerland. Workshop talk Discrete time-trees: theory and open problems

  • June 2016, Evolution Meeting, Austin TX. Spotlight Session talk Nearest neighbours of phylogenetic time-trees

  • November 2015, Computational Biology Seminar, ETH Zürich, Basel, Switzerland. Seminar talk Convergence and curvature of phylogenetic Markov chains

  • October 2015, Alan Wilson Centre, Palmerston North, New Zealand. Regular talk Convergence and curvature of phylogenetic Markov chains

  • February 2015, University of Otago, Portobello, New Zealand. Regular talk The space of ultrametric phylogenetic trees

  • February 2015, Fred Hutchinson Cancer Research Center, Seattle WA, United States. Seminar talk The space of ultrametric phylogenetic trees

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  • Alex Gavryushkin
  • alex@biods.org
  • bioDS
  • alexfoldai

We build algorithms that learn from biological data.